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| | Home | CCDB | CC3D | CCRD | CCMD | 2D-PAGE | Search | Extract | ChemQuery | BLAST | Download | Stats | E. coli | |
| The following files are available for display or download: |
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| Protein Sequence (in FASTA format) | |
| CCDB_mature A list of all the CCDB mature E. coli proteins. The information includes Swiss_Prot_ID, gene position, name and mature protein sequence ( 4251 records). |
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| CCDB_translated A list of all the CCDB translated E. coli proteins. The information includes Swiss_Prot_ID, gene position, name and translated protein sequence ( 4251 records). |
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| CCDB_transmembane A list of all the CCDB E. coli proteins with at least one transmembrane domain. The information includes Swiss_Prot_ID, gene position, name and translated protein sequence ( 888 records). |
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CCDB_3D A list of all the all the CCDB E. coli proteins that have a structure determined . The information includes Swiss_Prot_ID, gene position, name, PDB_Accession or Model, and the translated protein sequence ( 1276 records). |
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| CCDB_modelled A list of all the CCDB E. coli proteins that have a structure determined by homology modelling. The information includes Swiss_Prot_ID, gene position, name, Model, and the translated protein sequence (770 records). |
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| CCDB_exp3D A list of CCDB E. coli proteins that have a structure determined by either NMR or X-ray. The information includes Swiss_Prot_ID, gene position, name, PDB_Accession, and the translated protein sequence ( 543 records). |
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| CCDB_unsolved A list of CCDB E. coli proteins that have neither a solved structure, nor a homology model. The information includes Swiss_Prot_ID, gene position, name, and the translated protein sequence ( 2976 records). |
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| Complete CCDB Protein sequence A list of the sequence of all the CCDB proteins in FASTA format. The information includes Swiss_Prot_ID, name, and the translated protein sequence ( 4251 records). |
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DNA Sequence (in FASTA format) |
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| Escherichia coli K12 genome sequence (4639221 bases) This file contains the entire K12 genome sequence as one FASTA file. |
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| F plasmid genomic DNA (99159 bases) | |
| DNA Sequence A list of all the CCDB E. coli genes in FASTA format. The information includes Swiss_Prot_ID and DNA sequence ( 4252 records). | |
Colicards |
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| Colicards A full set of CCDB Colicards in a single flatfile ( 4251 records). |
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Log files |
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| Files Set of text files used to track updates to the ColiCard files. |
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Original Designer: Bahram Habibi-Nazhad (BHN) (Last Update: Aug 01, 2008) |